Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
132
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
161
DNA binding
134
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
126
May, 2021
60
August, 2017
35
August, 2021
35
December, 2017
31
February, 2018
26
February, 2021
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
261
bam
256
bigWig
131
tsv
130
bed narrowPeak
119
fastq
30
tagAlign
17
bigBed narrowPeak
16
bed bed3+
7
bedpe bed3+
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
341
Homo sapiens
Biosample type
2455
tissue
965
primary cell
573
cell line
341
in vitro differentiated cells
9
stem cell
Organ
76
connective tissue
22
embryo
20
epithelium
14
liver
2
pancreas
1
adipose tissue
1
heart
Project
341
AMP
Genome assembly (visualization)
280
hg19
260
GRCh38
4
hg18
Lab
295
AMP-T2D consortium
42
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
control
month_released!
February, 2023
BIOSAMPLE
ASSAY
341 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
59
4
7
1
1
cardiomyocytes
3
59
embryonic stem cell
34
7
5
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 26 more…
See all biosamples
Download