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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
433
Transcription
288
DNA accessibility
247
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
202
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
47
June, 2019
45
August, 2017
43
April, 2018
42
February, 2021
31
October, 2019
19
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
603
bigWig
577
bam
386
fastq
295
bed narrowPeak
261
tsv
112
zippedFastqFolder
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
995
Homo sapiens
Biosample type
2512
tissue
995
primary cell
578
cell line
357
in vitro differentiated cells
9
stem cell
Organ
332
epithelium
287
pancreas
35
connective tissue
32
vasculature
30
kidney
28
blood vessel
20
vein
14
brain
12
liver
11
musculature of body
10
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
513
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
608
hg19
533
GRCh38
Lab
481
AMP-T2D consortium
277
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
995 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
pancreatic alpha cell
7
52
35
12
1
pancreatic beta cell
7
21
23
12
1
exocrine cell
39
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