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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
188
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA accessibility
247
DNA binding
184
Transcription
52
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
September, 2020
47
June, 2019
47
September, 2018
46
August, 2017
41
February, 2021
29
October, 2019
13
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
603
bigWig
577
bam
393
fastq
295
bed narrowPeak
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
786
Homo sapiens
Biosample type
1474
tissue
786
primary cell
460
cell line
226
in vitro differentiated cells
5
stem cell
Organ
269
epithelium
226
pancreas
31
vasculature
27
kidney
26
blood vessel
21
connective tissue
20
vein
15
brain
10
musculature of body
8
blood
8
bodily fluid
8
liver
7
heart
4
eye
1
bone element
1
bone marrow
Project
359
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
369
hg19
284
GRCh38
Lab
327
AMP-T2D consortium
318
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
1
ITG
Audit category:
32
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
files.file_type!
tsv
BIOSAMPLE
ASSAY
786 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
7
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
7
23
11
16
1
exocrine cell
39
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