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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
13
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
13
DNA binding
Target of assay
10
histone
10
histone modification
7
narrow histone mark
control
3
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
7
December, 2017
2
May, 2021
1
January, 2018
Available data
29
bam
29
bigWig
20
fastq
14
bed narrowPeak
14
tsv
bed bed3+
Organism
28
Homo sapiens
Biosample type
20
in vitro differentiated cells
8
cell line
Organ
866
pancreas
671
liver
623
connective tissue
473
epithelium
461
adipose tissue
303
heart
264
kidney
220
brain
201
vasculature
198
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
56
eye
56
musculature of body
30
nerve
28
embryo
20
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
1
hg18
Lab
28
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
control
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
28 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
11
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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