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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
Assay category
32
DNA accessibility
19
Transcription
4
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
Available data
33
bed narrowPeak
6
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
bed bedMethyl
1
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
56
tissue
3
primary cell
Organ
pancreas
680
liver
646
connective tissue
488
epithelium
465
adipose tissue
365
heart
338
kidney
253
brain
212
vasculature
208
blood vessel
159
bone element
132
artery
104
limb
86
musculature of body
63
blood
63
bodily fluid
59
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
33
hg19
6
GRCh38
Lab
59
AMP-T2D consortium
target.investigated_as!
control
files.file_type!
bed bedMethyl
organ_slims!
pancreas
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
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