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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
12
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
6
January, 2019
5
November, 2018
3
December, 2018
1
March, 2020
1
October, 2017
Available data
16
bam
16
bigWig
16
fastq
14
bed narrowPeak
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
bigBed broadPeak
1
tsv
Organism
16
Homo sapiens
Biosample type
16
tissue
Organ
886
pancreas
640
connective tissue
620
liver
472
epithelium
465
adipose tissue
303
heart
264
kidney
217
brain
197
vasculature
196
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
57
musculature of body
56
eye
30
embryo
30
nerve
20
lung
16
skeleton
16
spleen
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
16
AMP
Genome assembly (visualization)
15
GRCh38
13
hg19
Lab
16
AMP-T2D consortium
target.investigated_as!
control
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
12
2
1
1
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