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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
441
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
441
DNA binding
Target of assay
335
transcription factor
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
57
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
256
November, 2017
50
December, 2017
49
November, 2018
37
August, 2017
27
May, 2020
17
August, 2021
5
October, 2019
Available data
419
bigWig
413
bed narrowPeak
409
bam
375
fastq
352
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
58
tagAlign
5
bed bed3+
tar
Organism
441
Homo sapiens
Biosample type
315
cell line
109
tissue
14
in vitro differentiated cells
3
primary cell
Organ
441
liver
190
brain
170
pancreas
118
connective tissue
114
heart
102
epithelium
80
vasculature
78
blood vessel
54
blood
54
bodily fluid
49
adipose tissue
49
limb
40
kidney
33
musculature of body
25
artery
24
nerve
15
embryo
15
vein
12
spleen
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
441
AMP
Genome assembly (visualization)
412
hg19
359
GRCh38
Lab
427
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
control
files.file_type!
tar
BIOSAMPLE
ASSAY
441 results
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Clear Filters
ChIP-seq
cell line
HepG2
315
tissue
liver
102
right lobe of liver
7
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
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