Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
136
total RNA-seq
39
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
150
DNA binding
138
Transcription
40
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
control
RNA binding protein
3
chromatin remodeller
Date released
121
May, 2021
56
August, 2017
35
August, 2021
33
December, 2017
31
February, 2018
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
255
bam
253
bigWig
131
tsv
126
bed narrowPeak
113
fastq
30
tagAlign
20
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
343
Homo sapiens
Biosample type
2405
tissue
1043
primary cell
513
cell line
343
in vitro differentiated cells
9
stem cell
Organ
85
connective tissue
22
embryo
18
epithelium
12
liver
2
pancreas
1
adipose tissue
1
heart
Project
343
AMP
Genome assembly (visualization)
283
hg19
254
GRCh38
4
hg18
Lab
302
AMP-T2D consortium
37
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
control
RNA binding protein
files.file_type!
txt
BIOSAMPLE
ASSAY
343 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
55
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
29
7
5
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 29 more…
See all biosamples
Download