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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
114
ChIP-seq
2
ATAC-seq
Assay category
114
DNA binding
2
DNA accessibility
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
39
August, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
2937
bigWig
2877
bam
1608
bed narrowPeak
1597
tsv
1178
fastq
833
bigBed narrowPeak
330
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
64
xls
60
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
110
Homo sapiens
Biosample type
58
cell line
37
tissue
21
primary cell
Organ
58
liver
15
brain
14
pancreas
13
musculature of body
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
116
AMP
Genome assembly (visualization)
115
hg19
77
GRCh38
Lab
114
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
control
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
116 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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