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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
213
ChIP-seq
150
total RNA-seq
97
single cell RNA-seq
84
ATAC-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
249
Transcription
213
DNA binding
114
DNA accessibility
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
June, 2019
45
August, 2017
43
April, 2018
28
October, 2019
15
July, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
2
October, 2018
Available data
603
bigWig
577
bam
393
fastq
295
bed narrowPeak
267
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
577
Homo sapiens
Biosample type
1762
tissue
577
primary cell
506
cell line
261
in vitro differentiated cells
2
stem cell
Organ
221
epithelium
182
pancreas
33
connective tissue
28
kidney
28
vasculature
24
blood vessel
18
vein
11
brain
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
397
AMP
180
T1D
Genome assembly (visualization)
567
hg19
522
GRCh38
Lab
397
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
40
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
BIOSAMPLE
ASSAY
577 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
7
10
12
7
pancreatic alpha cell
7
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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