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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
5
Hi-C
Assay category
DNA accessibility
114
DNA binding
5
3D chromatin structure
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
39
August, 2017
4
July, 2019
3
October, 2017
3
October, 2019
Available data
2796
bigWig
2697
bam
1583
tsv
1325
bed narrowPeak
1088
fastq
801
bigBed narrowPeak
330
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
55
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
113
Homo sapiens
Biosample type
59
cell line
35
tissue
25
primary cell
Organ
59
liver
18
brain
13
musculature of body
13
pancreas
8
epithelium
8
vasculature
6
blood vessel
2
connective tissue
2
vein
1
adipose tissue
Project
119
AMP
Genome assembly (visualization)
119
hg19
77
GRCh38
Lab
119
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
target.investigated_as!
control
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ChIP-seq
Hi-C
cell line
HepG2
58
Panc1
1
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
+ See 2 more…
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