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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
5
Hi-C
1
ATAC-seq
Assay category
21
DNA binding
5
3D chromatin structure
1
DNA accessibility
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
Date released
20
August, 2017
4
July, 2019
1
November, 2017
1
October, 2017
1
October, 2019
Available data
3106
bigWig
bam
1777
bed narrowPeak
1597
tsv
1190
fastq
1042
bigBed narrowPeak
330
tagAlign
322
bed broadPeak
285
bigBed broadPeak
264
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
27
Homo sapiens
Biosample type
22
tissue
4
primary cell
1
cell line
Organ
13
musculature of body
8
pancreas
4
brain
2
blood vessel
2
connective tissue
2
epithelium
2
vasculature
1
adipose tissue
1
liver
Project
27
AMP
Genome assembly (visualization)
27
hg19
2
GRCh38
Lab
26
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
target.investigated_as!
control
files.file_type!
bam
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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