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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
110
ChIP-seq
3
Hi-C
2
ATAC-seq
Assay category
199
DNA accessibility
110
DNA binding
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
48
transcription factor
34
broad histone mark
28
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
68
November, 2017
41
August, 2017
9
November, 2018
4
October, 2017
4
October, 2019
2
July, 2019
1
March, 2019
1
November, 2020
Available data
2957
bigWig
2927
bam
1648
bed narrowPeak
1529
tsv
1188
fastq
963
bigBed narrowPeak
326
tagAlign
309
bed broadPeak
272
bigBed broadPeak
253
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
306
Homo sapiens
Biosample type
208
tissue
60
cell line
43
primary cell
1
in vitro differentiated cells
Organ
78
kidney
64
liver
50
brain
46
musculature of body
36
limb
30
heart
24
epithelium
22
pancreas
19
vasculature
18
ureter
blood vessel
11
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
312
AMP
Genome assembly (visualization)
289
hg19
272
GRCh38
Lab
310
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
target.investigated_as!
control
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
312 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
1
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
brain pericyte
1
1
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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