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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
56
ChIP-seq
2
ATAC-seq
Assay category
198
DNA accessibility
56
DNA binding
Target of assay
51
histone
51
histone modification
28
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
41
August, 2017
12
November, 2017
November, 2018
8
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2574
bigWig
2557
bam
1478
tsv
1356
bed narrowPeak
801
fastq
670
bigBed narrowPeak
314
tagAlign
254
bed broadPeak
252
bed bed3+
217
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
248
Homo sapiens
Biosample type
204
tissue
cell line
49
primary cell
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
45
brain
36
limb
30
heart
22
epithelium
18
pancreas
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
liver
2
nerve
Project
254
AMP
Genome assembly (visualization)
230
hg19
228
GRCh38
Lab
252
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
target.investigated_as!
control
month_released!
November, 2018
biosample_type!
cell line
BIOSAMPLE
ASSAY
254 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
12
3
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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