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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
108
ChIP-seq
2
ATAC-seq
Assay category
188
DNA accessibility
108
DNA binding
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
66
November, 2017
41
August, 2017
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
2913
bigWig
2842
bam
1611
bed narrowPeak
1529
tsv
1104
fastq
886
bigBed narrowPeak
326
tagAlign
296
bed broadPeak
259
bigBed broadPeak
242
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
7
bed bedgraph
7
csv
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
290
Homo sapiens
Biosample type
199
tissue
59
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
60
liver
46
musculature of body
45
brain
36
limb
30
heart
22
epithelium
19
pancreas
18
ureter
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
Project
296
AMP
Genome assembly (visualization)
273
hg19
258
GRCh38
Lab
294
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
control
month_released!
November, 2018
organ_slims!
vasculature
BIOSAMPLE
ASSAY
296 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
12
3
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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