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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
109
ChIP-seq
1
ATAC-seq
Assay category
200
DNA accessibility
109
DNA binding
Target of assay
60
histone
60
histone modification
49
transcription factor
32
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
41
August, 2017
9
November, 2018
October, 2019
October, 2017
1
March, 2019
1
November, 2020
Available data
2885
bigWig
2862
bam
1581
tsv
1576
bed narrowPeak
1175
fastq
966
bigBed narrowPeak
309
bed broadPeak
278
tagAlign
276
bigBed broadPeak
256
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
303
Homo sapiens
Biosample type
205
tissue
58
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
46
musculature of body
44
brain
32
limb
30
heart
19
pancreas
18
epithelium
18
ureter
11
vasculature
10
connective tissue
7
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
309
AMP
Genome assembly (visualization)
285
hg19
271
GRCh38
Lab
308
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
control
month_released!
October, 2017
October, 2019
BIOSAMPLE
ASSAY
309 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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