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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
54
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
15
January, 2019
12
November, 2018
8
January, 2021
1
January, 2018
Available data
55
bigWig
54
bam
54
bed narrowPeak
54
bigBed narrowPeak
54
fastq
Organism
63
Homo sapiens
Biosample type
55
cell line
8
primary cell
Organ
737
pancreas
681
liver
634
connective tissue
466
adipose tissue
340
heart
324
epithelium
262
kidney
225
brain
207
vasculature
204
blood vessel
159
bone element
130
artery
73
limb
63
blood
63
bodily fluid
54
eye
49
musculature of body
32
nerve
30
embryo
20
lung
20
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
8
T1D
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
55
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
control
lab.title!
Klaus Kaestner, Upenn
month_released!
June, 2019
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
54
1
primary cell
peripheral blood mononuclear cell
8
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