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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
pCHi-C
2
ChIP-seq
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
2
DNA binding
1
DNA methylation
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
21
October, 2019
June, 2019
1
February, 2020
1
July, 2019
Available data
27
bed narrowPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
54
Homo sapiens
Biosample type
53
tissue
1
primary cell
Organ
737
pancreas
681
liver
634
connective tissue
466
adipose tissue
340
heart
324
epithelium
262
kidney
225
brain
207
vasculature
204
blood vessel
159
bone element
130
artery
73
limb
63
blood
63
bodily fluid
54
eye
49
musculature of body
32
nerve
30
embryo
20
lung
20
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
28
hg19
Lab
54
AMP-T2D consortium
target.investigated_as!
control
lab.title!
Klaus Kaestner, Upenn
month_released!
June, 2019
BIOSAMPLE
ASSAY
54 results
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ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
RRBS
tissue
islet of Langerhans
1
14
4
2
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
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