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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
4
WGBS
3
ATAC-seq
3
total RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
31
DNA binding
4
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
control
Date released
35
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
425
bigWig
bam
401
tsv
25
fastq
13
bed narrowPeak
10
bigBed narrowPeak
7
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
43
Homo sapiens
Biosample type
43
tissue
1
in vitro differentiated cells
Organ
245
pancreas
210
kidney
204
epithelium
182
heart
103
liver
93
bone element
84
connective tissue
54
eye
51
vasculature
50
blood vessel
44
adipose tissue
42
brain
39
artery
36
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
44
AMP-T2D consortium
target.investigated_as!
control
lab.title!
Stephen Parker, UMich
files.file_type!
bam
BIOSAMPLE
ASSAY
44 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
total RNA-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
31
3
adipose tissue
1
3
1
1
subcutaneous adipose tissue
1
1
omental fat pad
1
in vitro differentiated cells
white fat cell
1
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