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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
28
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
28
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
664
February, 2021
329
November, 2017
315
August, 2017
304
August, 2021
244
October, 2019
187
May, 2021
171
May, 2020
163
June, 2019
120
July, 2018
117
February, 2023
93
May, 2019
81
November, 2018
77
July, 2019
December, 2017
66
April, 2019
66
May, 2022
63
March, 2020
59
November, 2019
47
September, 2023
45
October, 2018
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2018
8
January, 2021
6
April, 2018
5
December, 2019
5
March, 2019
5
November, 2020
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
103
bed narrowPeak
64
xls
57
txt
44
bigWig
38
bam
13
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
303
Homo sapiens
Biosample type
229
tissue
40
cell line
35
in vitro differentiated cells
primary cell
Organ
130
kidney
92
heart
27
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
304
AMP
Genome assembly (visualization)
102
GRCh38
57
hg19
Lab
140
AMP-T2D consortium
128
Katalin Susztak, Upenn
32
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
control
month_released!
December, 2017
biosample_type!
primary cell
BIOSAMPLE
ASSAY
304 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
14
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
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