Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
126
ChIP-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
126
DNA binding
4
3D chromatin structure
1
DNA accessibility
Target of assay
88
histone
88
histone modification
45
broad histone mark
42
narrow histone mark
38
transcription factor
control
9
RNA binding protein
2
chromatin remodeller
Date released
121
May, 2021
60
August, 2017
December, 2017
31
February, 2018
23
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
213
bigWig
209
bam
131
tsv
84
fastq
77
bed narrowPeak
30
tagAlign
8
bed bed3+
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
280
Homo sapiens
Biosample type
2294
tissue
853
primary cell
550
cell line
280
in vitro differentiated cells
7
stem cell
Organ
72
connective tissue
13
embryo
4
epithelium
2
pancreas
1
adipose tissue
1
heart
Project
280
AMP
Genome assembly (visualization)
216
hg19
209
GRCh38
4
hg18
Lab
241
AMP-T2D consortium
37
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
101
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
target.investigated_as!
control
month_released!
December, 2017
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
280 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
5
59
1
1
cardiomyocytes
59
3
embryonic stem cell
7
34
1
neural progenitor cell
7
14
cardiac precursors (cardiac muscle cell)
19
1
+ See 25 more…
See all biosamples
Download