Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
126
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
126
DNA binding
43
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
88
histone
88
histone modification
45
broad histone mark
42
narrow histone mark
38
transcription factor
control
9
RNA binding protein
2
chromatin remodeller
Date released
60
August, 2017
42
May, 2021
December, 2017
28
August, 2021
16
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
99
bam
98
bed narrowPeak
98
bigWig
69
fastq
30
tagAlign
12
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
186
Homo sapiens
Biosample type
1517
tissue
806
primary cell
466
cell line
186
in vitro differentiated cells
7
stem cell
Organ
80
connective tissue
7
embryo
2
epithelium
2
pancreas
1
adipose tissue
Project
186
AMP
Genome assembly (visualization)
131
hg19
99
GRCh38
4
hg18
Lab
142
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
target.investigated_as!
control
month_released!
December, 2017
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
186 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
59
8
1
1
embryonic stem cell
34
6
1
neural progenitor cell
14
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
1
+ See 17 more…
See all biosamples
Download