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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
63
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
41
histone
41
histone modification
22
transcription factor
20
broad histone mark
20
narrow histone mark
control
4
RNA binding protein
2
chromatin remodeller
Date released
48
August, 2017
December, 2017
31
February, 2018
4
January, 2018
1
August, 2018
Available data
226
bam
225
bigWig
131
tsv
98
bed narrowPeak
84
fastq
30
tagAlign
12
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
84
Homo sapiens
Biosample type
393
primary cell
365
cell line
274
tissue
84
in vitro differentiated cells
1
stem cell
Organ
49
connective tissue
11
embryo
1
adipose tissue
Project
84
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
4
hg18
Lab
84
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
target.investigated_as!
control
month_released!
December, 2017
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
47
1
pancreatic endoderm
6
4
1
definitive endodermal cell
2
2
1
primitive gut cell
2
2
1
embryonic stem cell
2
2
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