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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
15
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
Available data
29
bam
29
bigWig
20
fastq
14
bed narrowPeak
14
tsv
2
bed bed3+
Organism
30
Homo sapiens
Biosample type
22
in vitro differentiated cells
8
cell line
Organ
879
pancreas
680
liver
647
connective tissue
488
epithelium
466
adipose tissue
366
heart
340
kidney
253
brain
210
vasculature
205
blood vessel
159
bone element
132
artery
105
limb
85
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
19
vein
18
ureter
16
skeleton
16
spleen
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
30
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
1
hg18
Lab
30
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
control
month_released!
March, 2020
award.project!
LungMap
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
13
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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