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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
444
ChIP-seq
183
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
444
DNA binding
187
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
53
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
30
August, 2021
10
July, 2019
7
October, 2019
December, 2019
5
January, 2019
3
February, 2021
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
603
bigWig
574
bam
441
bed narrowPeak
388
fastq
358
bigBed narrowPeak
167
tsv
63
bed broadPeak
63
bigBed broadPeak
58
tagAlign
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
1
vcf
Organism
675
Homo sapiens
Biosample type
341
cell line
312
tissue
14
in vitro differentiated cells
8
primary cell
Organ
879
pancreas
675
liver
647
connective tissue
482
epithelium
466
adipose tissue
366
heart
337
kidney
253
brain
210
vasculature
205
blood vessel
159
bone element
132
artery
105
limb
85
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
19
lung
19
vein
18
ureter
16
skeleton
16
spleen
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
675
AMP
Genome assembly (visualization)
604
hg19
524
GRCh38
Lab
608
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
control
month_released!
March, 2020
December, 2019
BIOSAMPLE
ASSAY
675 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
318
14
1
1
2
2
2
1
tissue
liver
102
166
20
2
3
1
1
1
right lobe of liver
7
3
1
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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