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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
33
DNase-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
33
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
10
July, 2019
6
May, 2019
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
85
Homo sapiens
Biosample type
73
tissue
12
primary cell
Organ
879
pancreas
680
liver
647
connective tissue
488
epithelium
466
adipose tissue
340
kidney
326
heart
253
brain
210
vasculature
205
blood vessel
159
bone element
132
artery
105
limb
85
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
19
lung
19
vein
18
ureter
16
skeleton
16
spleen
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
85
AMP
Genome assembly (visualization)
69
hg19
51
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
month_released!
March, 2020
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
4
1
1
1
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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