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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
2
ATAC-seq
1
FAIRE-seq
Assay category
169
DNA binding
35
DNA accessibility
9
Transcription
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
13
July, 2019
7
October, 2017
2
November, 2018
Available data
216
bigWig
213
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
216
Homo sapiens
Biosample type
202
tissue
14
primary cell
Organ
623
pancreas
570
connective tissue
439
liver
425
adipose tissue
299
epithelium
224
heart
216
brain
153
vasculature
149
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
216
AMP
Genome assembly (visualization)
211
GRCh38
153
hg19
Lab
216
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
control
month_released!
May, 2020
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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