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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1036
total RNA-seq
713
ChIP-seq
259
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
28
snATAC-seq
23
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
2
MeRIP-seq
Assay category
1226
Transcription
713
DNA binding
458
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
255
August, 2017
229
August, 2021
213
October, 2019
170
May, 2020
162
June, 2019
120
July, 2018
95
February, 2023
93
May, 2019
77
July, 2019
70
November, 2017
66
April, 2019
66
May, 2022
47
September, 2023
45
October, 2018
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
36
December, 2017
24
February, 2020
November, 2018
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1746
bigWig
1713
bam
1073
tsv
963
bed narrowPeak
543
bigBed narrowPeak
287
fastq
203
bed broadPeak
192
bed bed3+
186
tagAlign
166
bigBed broadPeak
73
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2468
Homo sapiens
Biosample type
2476
tissue
1003
primary cell
437
cell line
244
in vitro differentiated cells
8
stem cell
Organ
521
connective tissue
469
pancreas
462
adipose tissue
308
liver
297
heart
293
kidney
235
brain
117
blood vessel
117
vasculature
104
limb
77
musculature of body
74
bone element
66
artery
56
eye
32
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
11
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2379
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1830
GRCh38
1731
hg19
Lab
2126
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
control
month_released!
November, 2018
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
2476 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
RNA microarray
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
298
58
68
1
7
4
3
1
1
2
adipose tissue
382
1
3
1
3
liver
167
98
20
1
1
3
1
1
1
kidney
49
21
75
64
13
6
1
1
1
heart left ventricle
3
29
2
18
3
1
4
1
1
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