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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
170
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
control
Date released
551
February, 2021
318
November, 2017
300
May, 2021
271
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
82
July, 2019
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
271
bigWig
256
fastq
251
bam
142
bed narrowPeak
89
tsv
74
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
31
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
265
Homo sapiens
Biosample type
178
tissue
48
in vitro differentiated cells
45
primary cell
Organ
159
pancreas
65
connective tissue
18
liver
17
adipose tissue
17
epithelium
13
musculature of body
Project
271
AMP
Genome assembly (visualization)
269
hg19
247
GRCh38
Lab
271
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
month_released!
November, 2018
BIOSAMPLE
ASSAY
271 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
14
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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