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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
35
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
15
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
November, 2018
1
February, 2023
Available data
214
bigWig
211
bam
201
bed narrowPeak
125
bigBed narrowPeak
99
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
23
tsv
14
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
253
Homo sapiens
Biosample type
238
tissue
15
primary cell
Organ
886
pancreas
648
connective tissue
630
liver
494
epithelium
466
adipose tissue
373
heart
342
kidney
253
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
60
eye
51
blood
51
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
253
AMP
Genome assembly (visualization)
212
GRCh38
156
hg19
Lab
253
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
control
month_released!
November, 2018
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
12
1
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
temporal lobe
13
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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