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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ATAC-seq
67
total RNA-seq
47
WGBS
14
ChIP-seq
11
snATAC-seq
9
Hi-C
5
MeRIP-seq
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
97
DNA accessibility
67
Transcription
49
DNA methylation
14
DNA binding
9
3D chromatin structure
Target of assay
14
histone
14
histone modification
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
80
May, 2022
56
February, 2023
19
September, 2020
17
May, 2021
14
August, 2017
8
January, 2021
8
March, 2020
7
August, 2020
6
February, 2021
5
November, 2020
4
August, 2021
4
July, 2018
4
March, 2019
4
October, 2019
3
October, 2022
2
July, 2019
2
November, 2019
1
August, 2022
1
February, 2020
October, 2017
Available data
bam
618
bigWig
436
fastq
417
tsv
210
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
244
Homo sapiens
Biosample type
152
primary cell
67
tissue
26
cell line
Organ
245
pancreas
210
kidney
204
epithelium
182
heart
103
liver
93
bone element
84
connective tissue
54
eye
51
vasculature
50
blood vessel
44
adipose tissue
39
artery
36
brain
36
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
65
AMP
28
T1D
Genome assembly (visualization)
22
hg19
13
GRCh38
Lab
152
Klaus Kaestner, Upenn
55
AMP-T2D consortium
27
Kyle Gaulton, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
24
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
target.investigated_as!
control
month_released!
October, 2017
files.file_type!
bam
BIOSAMPLE
ASSAY
245 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
Hi-C
MeRIP-seq
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
19
12
14
7
3
2
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
18
1
3
2
1
Panc1
1
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