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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
66
DNA binding
62
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
control
6
transcription factor
4
RNA binding protein
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
147
bigWig
144
bam
72
bed narrowPeak
66
bigBed narrowPeak
62
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
171
Homo sapiens
Biosample type
143
tissue
28
primary cell
Organ
72
heart
30
kidney
18
connective tissue
15
brain
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
171
AMP
Genome assembly (visualization)
153
hg19
140
GRCh38
Lab
171
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
171 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
heart left ventricle
29
2
1
4
2
kidney
19
1
1
heart right ventricle
11
2
heart
7
2
1
1
omental fat pad
4
1
+ See 26 more…
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 18 more…
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