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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
total RNA-seq
31
ChIP-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
DNA accessibility
31
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
663
February, 2021
356
May, 2021
350
August, 2017
335
November, 2017
242
October, 2019
225
August, 2021
218
May, 2020
168
July, 2018
101
May, 2022
100
February, 2023
97
July, 2019
97
May, 2019
73
December, 2017
72
November, 2018
66
April, 2019
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
33
November, 2019
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
23
June, 2019
12
October, 2017
10
December, 2019
9
April, 2020
9
November, 2020
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
123
tsv
57
txt
45
bigWig
31
bam
30
bed narrowPeak
16
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
224
Homo sapiens
Biosample type
159
tissue
40
cell line
23
in vitro differentiated cells
3
primary cell
Organ
92
heart
60
kidney
30
liver
8
embryo
6
blood vessel
6
vasculature
5
epithelium
4
pancreas
3
connective tissue
2
artery
1
adipose tissue
Project
225
AMP
Genome assembly (visualization)
48
hg19
31
GRCh38
Lab
133
AMP-T2D consortium
58
Katalin Susztak, Upenn
32
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
control
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
225 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
14
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
14
adipocyte
1
osteoblast
1
primary cell
hepatocyte
3
See all biosamples
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