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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
24
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
31
DNA binding
24
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
350
May, 2021
265
November, 2017
167
February, 2021
148
May, 2020
134
May, 2022
110
February, 2023
106
August, 2017
78
August, 2021
73
September, 2018
60
October, 2019
59
November, 2018
59
September, 2020
48
July, 2018
47
June, 2019
43
April, 2018
37
December, 2017
31
February, 2018
28
December, 2018
28
July, 2019
24
March, 2020
20
January, 2019
19
November, 2019
9
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
September, 2017
4
August, 2018
4
May, 2019
4
October, 2022
3
June, 2018
2
October, 2018
Available data
47
bigWig
42
bed narrowPeak
41
bam
24
tsv
16
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
78
Homo sapiens
Biosample type
tissue
40
cell line
35
in vitro differentiated cells
3
primary cell
Organ
30
liver
8
embryo
5
epithelium
4
connective tissue
2
kidney
2
pancreas
Project
78
AMP
Genome assembly (visualization)
59
hg19
41
GRCh38
Lab
44
AMP-T2D consortium
30
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
control
biosample_type!
tissue
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
14
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
14
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
3
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