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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
15
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
19
Transcription
16
DNA binding
1
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
control
8
narrow histone mark
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
31
bam
31
bigWig
31
fastq
16
bed narrowPeak
15
tsv
1
hic
Organism
32
Homo sapiens
Biosample type
31
in vitro differentiated cells
2
cell line
2
stem cell
1
primary cell
Organ
10
embryo
Project
31
AMP
4
community
1
ITG
Genome assembly (visualization)
32
GRCh38
31
hg19
Lab
31
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
2
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
36 results
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Clear Filters
ChIP-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
in vitro differentiated cells
pancreatic endoderm
6
4
definitive endodermal cell
2
2
embryonic stem cell
2
2
endocrine cell
2
2
posterior foregut
2
2
+ See 2 more…
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
primary cell
chondrocytes
1
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