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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
total RNA-seq
84
RNA microarray
21
ATAC-seq
6
single cell RNA-seq
5
ChIP-seq
3
snDrop-seq
1
pCHi-C
Assay category
550
Transcription
21
DNA accessibility
5
DNA binding
Target of assay
5
transcription factor
control
Date released
664
February, 2021
329
November, 2017
315
August, 2017
304
August, 2021
244
October, 2019
187
May, 2021
171
May, 2020
163
June, 2019
120
July, 2018
117
February, 2023
93
May, 2019
81
November, 2018
77
July, 2019
73
December, 2017
66
April, 2019
66
May, 2022
63
March, 2020
59
November, 2019
47
September, 2023
45
October, 2018
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2018
8
January, 2021
6
April, 2018
5
December, 2019
5
March, 2019
5
November, 2020
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
566
bam
552
tsv
549
bigWig
89
txt
22
bed narrowPeak
6
csv
5
tagAlign
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
664
Homo sapiens
Biosample type
545
tissue
93
cell line
primary cell
26
in vitro differentiated cells
Organ
452
connective tissue
386
adipose tissue
150
bone element
64
artery
64
blood vessel
64
heart
64
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
664
AMP
Genome assembly (visualization)
571
hg19
566
GRCh38
Lab
664
AMP-T2D consortium
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
target.investigated_as!
control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
664 results
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total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
4
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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