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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
14
ATAC-seq
12
ChIP-seq
12
WGBS
8
Hi-C
2
FAIRE-seq
Assay category
62
Transcription
27
DNA methylation
16
DNA accessibility
12
DNA binding
8
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
control
2
narrow histone mark
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
96
bigWig
92
bam
62
tsv
23
bed bedMethyl
23
bigBed bedMethyl
19
bed narrowPeak
15
fastq
12
tagAlign
8
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
125
Homo sapiens
Biosample type
97
tissue
28
primary cell
Organ
28
brain
25
heart
19
connective tissue
13
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
11
kidney
11
pancreas
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
125
AMP
Genome assembly (visualization)
101
hg19
90
GRCh38
Lab
124
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
control
BIOSAMPLE
ASSAY
125 results
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total RNA-seq
small RNA-seq
RRBS
ATAC-seq
ChIP-seq
WGBS
Hi-C
FAIRE-seq
tissue
brain
1
12
heart left ventricle
2
1
2
4
body of pancreas
2
2
4
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 18 more…
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