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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
44
total RNA-seq
23
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
195
DNA accessibility
62
Transcription
27
DNA methylation
23
DNA binding
8
3D chromatin structure
Target of assay
19
histone
19
histone modification
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
292
bigWig
289
bam
217
bed narrowPeak
212
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
62
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
Organism
315
Homo sapiens
Biosample type
240
tissue
75
primary cell
Organ
91
kidney
58
heart
51
musculature of body
45
brain
37
limb
33
connective tissue
31
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
7
eye
5
artery
2
pericardium
Project
315
AMP
Genome assembly (visualization)
286
GRCh38
275
hg19
Lab
315
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
315 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
+ See 50 more…
primary cell
skeletal muscle satellite cell
1
7
1
cardiac fibroblast
3
3
1
mesenchymal stem cell
6
epithelial cell of proximal tubule
1
1
2
1
cardiac muscle cell
1
2
1
+ See 26 more…
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