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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
37
ChIP-seq
5
ATAC-seq
2
single cell RNA-seq
Assay category
37
DNA binding
5
DNA accessibility
2
Transcription
Target of assay
21
histone
21
histone modification
16
transcription factor
11
narrow histone mark
10
broad histone mark
control
5
RNA binding protein
Date released
60
August, 2017
42
May, 2021
35
December, 2017
28
August, 2021
16
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
10
bigWig
5
bam
5
bed narrowPeak
5
tagAlign
2
tsv
Organism
44
Homo sapiens
Biosample type
148
primary cell
44
in vitro differentiated cells
17
cell line
4
tissue
Organ
2
epithelium
2
pancreas
Project
44
AMP
Genome assembly (visualization)
10
hg19
5
GRCh38
Lab
37
Kyle Gaulton, UCSD
7
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
2
audit script error
target.investigated_as!
control
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
32
5
cardiomyocytes
3
cardiomyocytes (cardiac muscle cell)
2
pancreatic PP cell
2
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