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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
29
ATAC-seq
17
pCHi-C
10
snATAC-seq
9
single cell RNA-seq
7
total RNA-seq
1
DNAme array
Assay category
39
DNA accessibility
36
DNA binding
16
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
control
5
RNA binding protein
Date released
260
August, 2021
202
February, 2023
180
May, 2022
161
February, 2021
90
August, 2017
90
May, 2021
68
October, 2019
58
May, 2020
56
September, 2020
47
September, 2023
44
March, 2020
28
November, 2019
25
February, 2020
23
July, 2019
19
April, 2020
17
November, 2017
16
January, 2021
15
May, 2023
6
November, 2020
6
October, 2017
5
December, 2019
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
2
November, 2018
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2017
1
December, 2018
1
September, 2018
Available data
bigWig
276
bam
173
tsv
133
bed narrowPeak
89
tagAlign
2
bed bed3+
Organism
108
Homo sapiens
Biosample type
37
in vitro differentiated cells
35
primary cell
21
tissue
16
cell line
Organ
19
lung
17
pancreas
16
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
73
AMP
19
LungMap
17
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
55
Kyle Gaulton, UCSD
35
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
17
inconsistent ontology term
target.investigated_as!
control
files.file_type!
bigWig
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
single cell RNA-seq
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
32
5
primary cell
monocyte
1
13
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
+ See 10 more…
tissue
lung
10
9
pancreas
1
thymus
1
cell line
EndoC_BH1
16
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