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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
329
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
329
DNA binding
4
Transcription
Target of assay
241
transcription factor
85
histone
85
histone modification
control
66
recombinant protein
50
broad histone mark
35
narrow histone mark
34
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
664
February, 2021
329
November, 2017
315
August, 2017
304
August, 2021
244
October, 2019
187
May, 2021
171
May, 2020
163
June, 2019
120
July, 2018
117
February, 2023
93
May, 2019
81
November, 2018
77
July, 2019
73
December, 2017
66
April, 2019
66
May, 2022
63
March, 2020
59
November, 2019
47
September, 2023
45
October, 2018
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2018
8
January, 2021
6
April, 2018
5
December, 2019
5
March, 2019
5
November, 2020
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
315
bam
312
bigWig
307
bed narrowPeak
306
bigBed narrowPeak
259
fastq
67
tagAlign
64
bed broadPeak
58
bigBed broadPeak
3
tar
Organism
329
Homo sapiens
Biosample type
261
cell line
70
tissue
primary cell
2
stem cell
Organ
259
liver
70
brain
Project
329
AMP
4
community
Genome assembly (visualization)
274
GRCh38
259
hg19
Lab
329
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
333 results
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ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
259
EndoC-BH1
1
1
tissue
layer of hippocampus
19
caudate nucleus
13
substantia nigra
13
cingulate gyrus
12
middle frontal area 46
12
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stem cell
SB Ad3.1
1
1
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