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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
64
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
control
3
other context
3
other post-translational modification
Date released
664
February, 2021
329
November, 2017
315
August, 2017
304
August, 2021
244
October, 2019
187
May, 2021
171
May, 2020
163
June, 2019
120
July, 2018
117
February, 2023
93
May, 2019
81
November, 2018
77
July, 2019
73
December, 2017
66
April, 2019
66
May, 2022
63
March, 2020
59
November, 2019
47
September, 2023
45
October, 2018
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2018
8
January, 2021
6
April, 2018
5
December, 2019
5
March, 2019
5
November, 2020
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
81
bam
81
fastq
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
81
Homo sapiens
Biosample type
58
cell line
23
tissue
primary cell
Organ
53
liver
12
blood
12
bodily fluid
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
81
AMP
Genome assembly (visualization)
79
GRCh38
71
hg19
Lab
81
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
45
1
GM12878
12
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
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