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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
26
ATAC-seq
20
total RNA-seq
9
DNase-seq
7
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
75
DNA binding
36
DNA accessibility
21
Transcription
7
DNA methylation
2
3D chromatin structure
Target of assay
65
transcription factor
22
RNA binding protein
16
recombinant protein
10
histone
10
histone modification
control
7
chromatin remodeller
6
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
138
bam
111
bigWig
110
bed narrowPeak
82
fastq
73
bigBed narrowPeak
20
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
141
Homo sapiens
Biosample type
72
cell line
63
tissue
5
in vitro differentiated cells
1
primary cell
Organ
60
pancreas
53
liver
14
epithelium
12
blood
12
bodily fluid
6
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
141
AMP
Genome assembly (visualization)
136
GRCh38
130
hg19
Lab
141
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
control
BIOSAMPLE
ASSAY
141 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
EndoC_BH1
11
1
1
1
GM12878
12
tissue
islet of Langerhans
19
19
1
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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