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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
30
total RNA-seq
15
ATAC-seq
5
MeRIP-seq
1
DNase-seq
1
single cell RNA-seq
Assay category
32
DNA binding
31
Transcription
16
DNA accessibility
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
control
5
nucleotide modification
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
78
bam
77
bigWig
73
fastq
48
bed narrowPeak
30
tsv
15
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
csv
Organism
84
Homo sapiens
Biosample type
79
primary cell
3
cell line
2
tissue
Organ
77
pancreas
64
epithelium
6
connective tissue
Project
84
AMP
Genome assembly (visualization)
78
GRCh38
78
hg19
Lab
79
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
Audit category:
32
missing controlled_by
target.investigated_as!
control
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
DNase-seq
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 2 more…
cell line
EndoC_BH1
3
tissue
islet of Langerhans
2
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