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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
14
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
259
November, 2017
93
February, 2021
58
November, 2018
40
August, 2021
28
December, 2018
21
May, 2021
21
October, 2019
20
January, 2019
14
November, 2019
11
March, 2020
6
February, 2023
3
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
20
bam
20
bigWig
15
bed narrowPeak
8
bigBed narrowPeak
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
21
Homo sapiens
Biosample type
215
tissue
31
primary cell
21
cell line
8
in vitro differentiated cells
Organ
12
kidney
9
pancreas
2
epithelium
Project
21
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
21
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
control
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
Panc1
7
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
glomerular visceral epithelial cell
1
1
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