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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
147
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
control
9
RNA binding protein
2
chromatin remodeller
Date released
126
May, 2021
60
August, 2017
35
August, 2021
31
February, 2018
26
February, 2021
21
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
247
bam
245
bigWig
131
tsv
118
bed narrowPeak
105
fastq
30
tagAlign
20
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
343
Homo sapiens
Biosample type
2235
tissue
1040
primary cell
343
in vitro differentiated cells
238
cell line
9
stem cell
Organ
89
connective tissue
22
embryo
20
epithelium
liver
2
pancreas
1
adipose tissue
1
heart
Project
343
AMP
Genome assembly (visualization)
278
hg19
246
GRCh38
4
hg18
Lab
294
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
control
organ_slims!
liver
BIOSAMPLE
ASSAY
343 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
59
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
34
7
6
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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