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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
242
total RNA-seq
199
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
428
Transcription
285
DNA accessibility
244
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
46
August, 2017
45
June, 2019
43
April, 2018
30
October, 2019
26
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
592
bigWig
566
bam
393
fastq
289
bed narrowPeak
262
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
95
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1040
Homo sapiens
Biosample type
2235
tissue
1040
primary cell
343
in vitro differentiated cells
238
cell line
9
stem cell
Organ
385
epithelium
334
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
511
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
605
hg19
522
GRCh38
Lab
479
AMP-T2D consortium
324
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
organ_slims!
liver
BIOSAMPLE
ASSAY
1040 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
7
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
7
21
23
12
16
1
exocrine cell
39
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