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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
25
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
47
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
June, 2019
Available data
91
bam
83
bigWig
72
bed narrowPeak
58
tsv
23
bigBed narrowPeak
4
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
130
Homo sapiens
Biosample type
64
cell line
64
tissue
2
primary cell
Organ
889
pancreas
681
liver
634
connective tissue
476
epithelium
466
adipose tissue
300
heart
262
kidney
225
brain
207
vasculature
204
blood vessel
159
bone element
130
artery
73
limb
63
blood
63
bodily fluid
54
eye
49
musculature of body
32
nerve
30
embryo
20
lung
20
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
126
GRCh38
91
hg19
Lab
130
AMP-T2D consortium
target.investigated_as!
control
month_released!
June, 2019
BIOSAMPLE
ASSAY
130 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
1
36
3
tibial artery
1
1
18
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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