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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
79
DNA binding
58
DNA accessibility
58
Transcription
Target of assay
56
transcription factor
21
histone
21
histone modification
control
14
broad histone mark
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
64
February, 2021
35
February, 2023
27
December, 2018
21
October, 2019
15
January, 2019
12
November, 2018
8
January, 2021
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
147
bam
140
bigWig
128
bed narrowPeak
79
bigBed narrowPeak
58
tsv
54
fastq
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
195
Homo sapiens
Biosample type
119
cell line
66
tissue
10
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
187
AMP
8
T1D
Genome assembly (visualization)
182
GRCh38
148
hg19
Lab
187
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
control
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
tissue
coronary artery
3
1
36
2
tibial artery
18
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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