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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
single cell RNA-seq
1
pCHi-C
Assay category
56
Transcription
49
DNA accessibility
29
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
control
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
25
October, 2019
3
July, 2019
3
May, 2019
2
February, 2020
2
June, 2019
1
March, 2020
Available data
93
bam
85
bigWig
74
bed narrowPeak
57
tsv
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
135
Homo sapiens
Biosample type
69
tissue
64
cell line
2
primary cell
Organ
813
pancreas
682
liver
645
connective tissue
467
adipose tissue
424
epithelium
280
heart
278
kidney
255
brain
208
vasculature
203
blood vessel
159
bone element
130
artery
105
limb
89
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
vein
18
ureter
17
spleen
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
135
AMP-T2D consortium
target.investigated_as!
control
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
135 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
coronary artery
1
36
3
2
tibial artery
1
1
18
2
islet of Langerhans
4
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
4
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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